PubMed Indexed Publications by Michael Baudis et al.

55.Ai N, Cai H, Solovan C, Baudis M. CNARA: reliability assessment for genomic copy number profiles. BMC Genomics. 2016 Oct 12;17(1):799. PubMed PMID 27733115 PubMed Central PMCID: PMC5062840.  
54.Andersson A, Bluwstein A, Kumar N, Teloni F, Traenkle J, Baudis M, Altmeyer M, Hottiger MO. PKCα and HMGB1 antagonistically control hydrogen peroxide-induced poly-ADP-ribose formation. Nucleic Acids Res. 2016 Sep 19;44(16):7630-45. doi: 10.1093/nar/gkw442. Epub 2016 May 19. PubMed PMID 27198223 PubMed Central PMCID: PMC5027479.  
53.SIB Swiss Institute of Bioinformatics Members. The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28. PubMed PMID 26615188 PubMed Central PMCID: PMC4702916.  
52.Muff R, Rath P, Ram Kumar RM, Husmann K, Born W, Baudis M, Fuchs B. Genomic instability of osteosarcoma cell lines in culture: impact on the prediction of metastasis relevant genes. PLoS One. 2015 May 19;10(5):e0125611. doi: 10.1371/journal.pone.0125611. eCollection 2015. PubMed PMID 25992885 PubMed Central PMCID: PMC4438062.  
51.Baderca F, Chiticariu E, Baudis M, Solovan C. Biopsying parapsoriasis: quo vadis? Are morphological stains enough or are ancillary tests needed? Rom J Morphol Embryol. 2014;55(3 Suppl):1085-92. PubMed PMID 25607389  
50.Cai H, Gupta S, Rath P, Ai N, Baudis M. arrayMap 2014: an updated cancer genome resource. Nucleic Acids Res. 2015 Jan;43(Database issue):D825-30. doi: 10.1093/nar/gku1123. Epub 2014 Nov 26. PubMed PMID 25428357 PubMed Central PMCID: PMC4383937.  
49.Cai H, Kumar N, Bagheri HC, von Mering C, Robinson MD, Baudis M. Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens. BMC Genomics. 2014 Jan 29;15:82. doi: 10.1186/1471-2164-15-82. PubMed PMID 24476156 PubMed Central PMCID: PMC3909908.  
48.Cai H, Kumar N, Ai N, Gupta S, Rath P, Baudis M. Progenetix: 12 years of oncogenomic data curation. Nucleic Acids Res. 2014 Jan;42(Database issue):D1055-62. doi: 10.1093/nar/gkt1108. Epub 2013 Nov 12. PubMed PMID 24225322 PubMed Central PMCID: PMC3965091.  
47.Krieger M, Roos A, Stendel C, Claeys KG, Sonmez FM, Baudis M, Bauer P, Bornemann A, de Goede C, Dufke A, Finkel RS, Goebel HH, Häussler M, Kingston H, Kirschner J, Medne L, Muschke P, Rivier F, Rudnik-Schöneborn S, Spengler S, Inzana F, Stanzial F, Benedicenti F, Synofzik M, Lia Taratuto A, Pirra L, Tay SK, Topaloglu H, Uyanik G, Wand D, Williams D, Zerres K, Weis J, Senderek J. SIL1 mutations and clinical spectrum in patients with Marinesco-Sjogren syndrome. Brain. 2013 Dec;136(Pt 12):3634-44. doi: 10.1093/brain/awt283. Epub 2013 Oct 30. PubMed PMID 24176978  
46.Martin-Guerrero I, Salaverria I, Burkhardt B, Szczepanowski M, Baudis M, Bens S, de Leval L, Garcia-Orad A, Horn H, Lisfeld J, Pellissery S, Klapper W, Oschlies I, Siebert R. Recurrent loss of heterozygosity in 1p36 associated with TNFRSF14 mutations in IRF4 translocation negative pediatric follicular lymphomas. Haematologica. 2013 Aug;98(8):1237-41. doi: 10.3324/haematol.2012.073916. Epub 2013 Feb 26. PubMed PMID 23445872 PubMed Central PMCID: PMC3729904.  
45.Bluwstein A, Kumar N, Léger K, Traenkle J, Oostrum Jv, Rehrauer H, Baudis M, Hottiger MO. PKC signaling prevents irradiation-induced apoptosis of primary human fibroblasts. Cell Death Dis. 2013 Feb 14;4:e498. doi: 10.1038/cddis.2013.15. PubMed PMID 23412390 PubMed Central PMCID: PMC3734826.  
44.Salaverria I, Martin-Guerrero I, Burkhardt B, Kreuz M, Zenz T, Oschlies I, Arnold N, Baudis M, Bens S, García-Orad A, Lisfeld J, Schwaenen C, Szczepanowski M, Wessendorf S, Pfreundschuh M, Trümper L, Klapper W, Siebert R. High resolution copy number analysis of IRF4 translocation-positive diffuse large B-cell and follicular lymphomas. Genes Chromosomes Cancer. 2013 Feb;52(2):150-5. doi: 10.1002/gcc.22014. Epub 2012 Oct 17. PubMed PMID 23073988  
43.Kumar N, Cai H, von Mering C, Baudis M. Specific genomic regions are differentially affected by copy number alterations across distinct cancer types, in aggregated cytogenetic data. PLoS One. 2012;7(8):e43689. doi: 10.1371/journal.pone.0043689. Epub 2012 Aug 24. PubMed PMID 22937079 PubMed Central PMCID: PMC3427184.  
42.Beleut M, Zimmermann P, Baudis M, Bruni N, Bühlmann P, Laule O, Luu VD, Gruissem W, Schraml P, Moch H. Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome. BMC Cancer. 2012 Jul 23;12:310. doi: 10.1186/1471-2407-12-310. PubMed PMID 22824167 PubMed Central PMCID: PMC3488567.  
41.von Bueren AO, Gerss J, Hagel C, Cai H, Remke M, Hasselblatt M, Feuerstein BG, Pernet S, Delattre O, Korshunov A, Rutkowski S, Pfister SM, Baudis M. DNA copy number alterations in central primitive neuroectodermal tumors and tumors of the pineal region: an international individual patient data meta-analysis. J Neurooncol. 2012 Sep;109(2):415-23. doi: 10.1007/s11060-012-0911-7. Epub 2012 Jul 7. PubMed PMID 22772606  
40.Eggermann T, Spengler S, Venghaus A, Denecke B, Zerres K, Baudis M, Ensenauer R. 2p21 Deletions in hypotonia-cystinuria syndrome. Eur J Med Genet. 2012 Oct;55(10):561-3. doi: 10.1016/j.ejmg.2012.06.008. Epub 2012 Jul 17. PubMed PMID 22766003  
39.Spengler S, Begemann M, Ortiz Brüchle N, Baudis M, Denecke B, Kroisel PM, Oehl-Jaschkowitz B, Schulze B, Raabe-Meyer G, Spaich C, Blümel P, Jauch A, Moog U, Zerres K, Eggermann T. Molecular karyotyping as a relevant diagnostic tool in children with growth retardation with Silver-Russell features. J Pediatr. 2012 Nov;161(5):933-42. doi: 10.1016/j.jpeds.2012.04.045. Epub 2012 Jun 8. PubMed PMID 22683032  
38.Cai H, Kumar N, Baudis M. arrayMap: a reference resource for genomic copy number imbalances in human malignancies. PLoS One. 2012;7(5):e36944. doi: 10.1371/journal.pone.0036944. Epub 2012 May 18. PubMed PMID 22629346 PubMed Central PMCID: PMC3356349.  
37.Wernstedt A, Valtorta E, Armelao F, Togni R, Girlando S, Baudis M, Heinimann K, Messiaen L, Staehli N, Zschocke J, Marra G, Wimmer K. Improved multiplex ligation-dependent probe amplification analysis identifies a deleterious PMS2 allele generated by recombination with crossover between PMS2 and PMS2CL. Genes Chromosomes Cancer. 2012 Sep;51(9):819-31. doi: 10.1002/gcc.21966. Epub 2012 May 14. PubMed PMID 22585707 PubMed Central PMCID: PMC3398144.  
36.Luebke AM, Baudis M, Matthaei H, Vashist YK, Verde PE, Hosch SB, Erbersdobler A, Klein CA, Izbicki JR, Knoefel WT, Stoecklein NH. Losses at chromosome 4q are associated with poor survival in operable ductal pancreatic adenocarcinoma. Pancreatology. 2012 Jan-Feb;12(1):16-22. doi: 10.1016/j.pan.2011.11.001. Epub 2011 Nov 20. PubMed PMID 22487468  
35.Kumar N, Rehrauer H, Cai H, Baudis M. CDCOCA: a statistical method to define complexity dependence of co-occuring chromosomal aberrations. BMC Med Genomics. 2011 Mar 3;4:21. doi: 10.1186/1755-8794-4-21. PubMed PMID 21371302 PubMed Central PMCID: PMC3061884.  
34.Begemann M, Spengler S, Kanber D, Haake A, Baudis M, Leisten I, Binder G, Markus S, Rupprecht T, Segerer H, Fricke-Otto S, Mühlenberg R, Siebert R, Buiting K, Eggermann T. Silver-Russell patients showing a broad range of ICR1 and ICR2 hypomethylation in different tissues. Clin Genet. 2011 Jul;80(1):83-8. doi: 10.1111/j.1399-0004.2010.01514.x. Epub 2010 Jul 22. PubMed PMID 20738330  
33.Lacunza E, Baudis M, Colussi AG, Segal-Eiras A, Croce MV, Abba MC. MUC1 oncogene amplification correlates with protein overexpression in invasive breast carcinoma cells. Cancer Genet Cytogenet. 2010 Sep;201(2):102-10. doi: 10.1016/j.cancergencyto.2010.05.015. PubMed PMID 20682394  
32.Eggermann T, Spengler S, Bachmann N, Baudis M, Mau-Holzmann UA, Singer S, Rossier E. Chromosome 11p15 duplication in Silver-Russell syndrome due to a maternally inherited translocation t(11;15). Am J Med Genet A. 2010 Jun;152A(6):1484-7. doi: 10.1002/ajmg.a.33398. PubMed PMID 20503324  
31.Eggermann T, Schönherr N, Spengler S, Jäger S, Denecke B, Binder G, Baudis M. Identification of a 21q22 duplication in a Silver-Russell syndrome patient further narrows down the Down syndrome critical region. Am J Med Genet A. 2010 Feb;152A(2):356-9. doi: 10.1002/ajmg.a.33217. PubMed PMID 20101688  
30.Peralta R, Baudis M, Vazquez G, Juárez S, Ortiz R, Decanini H, Hernandez D, Gallegos F, Valdivia A, Piña P, Salcedo M. Increased expression of cellular retinol-binding protein 1 in laryngeal squamous cell carcinoma. J Cancer Res Clin Oncol. 2010 Jun;136(6):931-8. doi: 10.1007/s00432-009-0735-9. Epub 2010 Jan 7. PubMed PMID 20054560  
29.Spengler S, Schönherr N, Binder G, Wollmann HA, Fricke-Otto S, Mühlenberg R, Denecke B, Baudis M, Eggermann T. Submicroscopic chromosomal imbalances in idiopathic Silver-Russell syndrome (SRS): the SRS phenotype overlaps with the 12q14 microdeletion syndrome. J Med Genet. 2010 May;47(5):356-60. doi: 10.1136/jmg.2009.070052. Epub 2009 Sep 16. PubMed PMID 19762329  
28.Gerstung M, Baudis M, Moch H, Beerenwinkel N. Quantifying cancer progression with conjunctive Bayesian networks. Bioinformatics. 2009 Nov 1;25(21):2809-15. doi: 10.1093/bioinformatics/btp505. Epub 2009 Aug 19. PubMed PMID 19692554 PubMed Central PMCID: PMC2781752.  
27.Liu J, Bandyopadhyay N, Ranka S, Baudis M, Kahveci T. Inferring progression models for CGH data. Bioinformatics. 2009 Sep 1;25(17):2208-15. doi: 10.1093/bioinformatics/btp365. Epub 2009 Jun 15. PubMed PMID 19528087  
26.Bug S, Dürig J, Oyen F, Klein-Hitpass L, Martin-Subero JI, Harder L, Baudis M, Arnold N, Kordes U, Dührsen U, Schneppenheim R, Siebert R. Recurrent loss, but lack of mutations, of the SMARCB1 tumor suppressor gene in T-cell prolymphocytic leukemia with TCL1A-TCRAD juxtaposition. Cancer Genet Cytogenet. 2009 Jul;192(1):44-7. doi: 10.1016/j.cancergencyto.2009.03.001. PubMed PMID 19480937  
25.Boerma EG, Siebert R, Kluin PM, Baudis M. Translocations involving 8q24 in Burkitt lymphoma and other malignant lymphomas: a historical review of cytogenetics in the light of todays knowledge. Leukemia. 2009 Feb;23(2):225-34. doi: 10.1038/leu.2008.281. Epub 2008 Oct 16. Review. PubMed PMID 18923440  
24.Bauer VL, Braselmann H, Henke M, Mattern D, Walch A, Unger K, Baudis M, Lassmann S, Huber R, Wienberg J, Werner M, Zitzelsberger HF. Chromosomal changes characterize head and neck cancer with poor prognosis. J Mol Med (Berl). 2008 Dec;86(12):1353-65. doi: 10.1007/s00109-008-0397-0. Epub 2008 Sep 23. PubMed PMID 18810378  
23.Roos A, Elbracht M, Baudis M, Senderek J, Schönherr N, Eggermann T, Schüler HM. A 10.7 Mb interstitial deletion of 13q21 without phenotypic effect defines a further non-pathogenic euchromatic variant. Am J Med Genet A. 2008 Sep 15;146A(18):2417-20. doi: 10.1002/ajmg.a.32465. PubMed PMID 18698619  
22.Nieländer I, Martín-Subero JI, Wagner F, Baudis M, Gesk S, Harder L, Hasenclever D, Klapper W, Kreuz M, Pott C, Martinez-Climent JA, Dreyling M, Arnold N, Siebert R. Recurrent loss of the Y chromosome and homozygous deletions within the pseudoautosomal region 1: association with male predominance in mantle cell lymphoma. Haematologica. 2008 Jun;93(6):949-50. doi: 10.3324/haematol.12656. PubMed PMID 18515880  
21.Hoischen A, Ehrler M, Fassunke J, Simon M, Baudis M, Landwehr C, Radlwimmer B, Lichter P, Schramm J, Becker AJ, Weber RG. Comprehensive characterization of genomic aberrations in gangliogliomas by CGH, array-based CGH and interphase FISH. Brain Pathol. 2008 Jul;18(3):326-37. doi: 10.1111/j.1750-3639.2008.00122.x. Epub 2008 Mar 26. PubMed PMID 18371186  
20.Baudis M. Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data. BMC Cancer. 2007 Dec 18;7:226. PubMed PMID 18088415 PubMed Central PMCID: PMC2225423.  
19.Dürig J, Bug S, Klein-Hitpass L, Boes T, Jöns T, Martin-Subero JI, Harder L, Baudis M, Dührsen U, Siebert R. Combined single nucleotide polymorphism-based genomic mapping and global gene expression profiling identifies novel chromosomal imbalances, mechanisms and candidate genes important in the pathogenesis of T-cell prolymphocytic leukemia with inv(14)(q11q32). Leukemia. 2007 Oct;21(10):2153-63. Epub 2007 Aug 16. PubMed PMID 17713554  
18.Liu J, Mohammed J, Carter J, Ranka S, Kahveci T, Baudis M. Distance-based clustering of CGH data. Bioinformatics. 2006 Aug 15;22(16):1971-8. Epub 2006 May 16. PubMed PMID 16705014  
17.Mao X, Hamoudi RA, Talbot IC, Baudis M. Allele-specific loss of heterozygosity in multiple colorectal adenomas: toward an integrated molecular cytogenetic map II. Cancer Genet Cytogenet. 2006 May;167(1):1-14. PubMed PMID 16682279  
16.Baudis M. Online database and bioinformatics toolbox to support data mining in cancer cytogenetics. Biotechniques. 2006 Mar;40(3):269-70, 272. PubMed PMID 16568815  
15.Baudis M, Prima V, Tung YH, Hunger SP. ABCB1 over-expression and drug-efflux in acute lymphoblastic leukemia cell lines with t(17;19) and E2A-HLF expression. Pediatr Blood Cancer. 2006 Nov;47(6):757-64. PubMed PMID 16206189  
14.Hidalgo A, Baudis M, Petersen I, Arreola H, Piña P, Vázquez-Ortiz G, Hernández D, González J, Lazos M, López R, Pérez C, García J, Vázquez K, Alatorre B, Salcedo M. Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma. BMC Cancer. 2005 Jul 9;5:77. PubMed PMID 16004614 PubMed Central PMCID: PMC1186020.  
13.Mao X, Hamoudi RA, Zhao P, Baudis M. Genetic losses in breast cancer: toward an integrated molecular cytogenetic map. Cancer Genet Cytogenet. 2005 Jul 15;160(2):141-51. PubMed PMID 15993270  
12.Vandesompele J, Baudis M, De Preter K, Van Roy N, Ambros P, Bown N, Brinkschmidt C, Christiansen H, Combaret V, Lastowska M, Nicholson J, O'Meara A, Plantaz D, Stallings R, Brichard B, Van den Broecke C, De Bie S, De Paepe A, Laureys G, Speleman F. Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma. J Clin Oncol. 2005 Apr 1;23(10):2280-99. PubMed PMID 15800319  
11.Kaiser U, Uebelacker I, Abel U, Birkmann J, Trümper L, Schmalenberg H, Karakas T, Metzner B, Hossfeld DK, Bischoff HG, Franke A, Reiser M, Müller P, Mantovani L, Grundeis M, Rothmann F, von Seydewitz CU, Mesters RM, Steinhauer EU, Krahl D, Schumacher K, Kneba M, Baudis M, Schmitz N, Pfab R, Köppler H, Parwaresch R, Pfreundschuh M, Havemann K. Randomized study to evaluate the use of high-dose therapy as part of primary treatment for "aggressive" lymphoma. J Clin Oncol. 2002 Nov 15;20(22):4413-9. PubMed PMID 12431962  
10.Wessendorf S, Lichter P, Schwänen C, Fritz B, Baudis M, Walenta K, Kloess M, Döhner H, Bentz M. Potential of chromosomal and matrix-based comparative genomic hybridization for molecular diagnostics in lymphomas. Ann Hematol. 2001;80 Suppl 3:B35-7. Review. PubMed PMID 11757703
9.Baudis M, Cleary ML. an online repository for molecular cytogenetic aberration data. Bioinformatics. 2001 Dec;17(12):1228-9. PubMed PMID 11751233  
8.Bentz M, Barth TF, Brüderlein S, Bock D, Schwerer MJ, Baudis M, Joos S, Viardot A, Feller AC, Müller-Hermelink HK, Lichter P, Döhner H, Möller P. Gain of chromosome arm 9p is characteristic of primary mediastinal B-cell lymphoma (MBL): comprehensive molecular cytogenetic analysis and presentation of a novel MBL cell line. Genes Chromosomes Cancer. 2001 Apr;30(4):393-401. PubMed PMID 11241792
7.Baudis M, Bentz M. Comparative genomic hybridization for the analysis of leukemias and lymphomas. Methods Mol Med. 2001;55:43-64. doi: 10.1385/1-59259-074-8:43. PubMed PMID 21312103
6.Bentz M, Plesch A, Bullinger L, Stilgenbauer S, Ott G, Müller-Hermelink HK, Baudis M, Barth TF, Möller P, Lichter P, Döhner H. t(11;14)-positive mantle cell lymphomas exhibit complex karyotypes and share similarities with B-cell chronic lymphocytic leukemia. Genes Chromosomes Cancer. 2000 Mar;27(3):285-94. PubMed PMID 10679918
5.Weber RG, Boström J, Wolter M, Baudis M, Collins VP, Reifenberger G, Lichter P. Analysis of genomic alterations in benign, atypical, and anaplastic meningiomas: toward a genetic model of meningioma progression. Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14719-24. PubMed PMID 9405679 PubMed Central PMCID: PMC25103.  
4.Werner CA, Döhner H, Joos S, Trümper LH, Baudis M, Barth TF, Ott G, Möller P, Lichter P, Bentz M. High-level DNA amplifications are common genetic aberrations in B-cell neoplasms. Am J Pathol. 1997 Aug;151(2):335-42. PubMed PMID 9250147 PubMed Central PMCID: PMC1858003.
3.Lichter P, Fischer K, Joos S, Fink T, Baudis M, Potkul RK, Ohl S, Solinas-Toldo S, Weber R, Stilgenbauer S, Bentz M, Döhner H. Efficacy of current molecular cytogenetic protocols for the diagnosis of chromosome aberrations in tumor specimens. Cytokines Mol Ther. 1996 Sep;2(3):163-9. Review. PubMed PMID 9384700
2.Bentz M, Bergerheim US, Li C, Joos S, Werner CA, Baudis M, Gnarra J, Merino MJ, Zbar B, Linehan WM, Lichter P. Chromosome imbalances in papillary renal cell carcinoma and first cytogenetic data of familial cases analyzed by comparative genomic hybridization. Cytogenet Cell Genet. 1996;75(1):17-21. PubMed PMID 8995481
1.Bentz M, Döhner H, Werner CA, Huck K, Baudis M, Joos S, Schlegelberger B, Trümper LH, Feller AC, Pfreundschuh M, et al. Identification of genetic imbalances in malignant lymphoma using comparative genomic hybridization. Stem Cells. 1995 Dec;13 Suppl 3:83-7. Review. PubMed PMID 8747993
Topic revision: r4 - 10 Nov 2015, MichaelBaudis
Michael Baudis